Manuscript Revision 2

Finished revision 2 of the paper last week. The associated version of ExpressionPlot is 1.3. There are several improvements over the previous revision.

  • Limma is now used to calculate differential expression statistics for microarrays.
  • User-defined event types are now available through the event_types.tsv interface (described in User’s Guide)
  • Annotation pipeline is now part of ExpressionPlot
  • A few other bug fixes, mostly due to Sean O’Keeffe and Mike Muratet

Here are the links for the submitted manuscript:

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A web-based framework for analysis of RNA-Seq and microarray gene expression data